Public symposium of the BioHackathon 2018 will be held at the Hotel Ichibata in Matsue on Dec 9th.

Note for speakers: Please try to leave few minutes for Q&A within a given slot (except for lightning talks).

9:00 Registration opens

Talks: Resources

10:00-10:20	Introduction to the 11th NBDC/DBCLS BioHackathon & recap ELIXIR BH18
	Toshiaki Katayama Database Center for Life Science, Japan
10:30-10:35	FAIRness assessment for tools/software applications
	Leyla Jael Garcia Castro Elixir Hub
10:35-10:40	NBDC RDF portal 2018
	Shuichi Kawashima Database Center for Life Science (DBCLS), Japan

Talks: Biomedical

10:40-10:50	A single cell gene expression ontology (scOnto)
	Sebastian Burgstaller-Muehlbacher Max F Perutz Laboratories, Vienna Biocenter, Medical University of Vienna
10:50-11:00	Transcription factor ontology
	Yosuke Tanigawa Department of Biomedical Data Science, Stanford University (Stanford), U.S.A.
11:00-11:10	PhenoTips: helping doctors collect structured data to better diagnose genetic conditions
	Orion Buske Gene42, Canada
11:10-11:20	The RD-Connect Genome-Phenome Analysis Platform, for analysing, sharing, and solving rare disease cases
	Steven Laurie Centro Nacional de Analisis Genomico (CNAG-CRG), Barcelona, Spain
11:20-11:30	Structured Review and a Datascope Library: Surfing Waves of Knowledge Between BioThings
	Núria Queralt Rosinach Scripps Research (SR), USA
11:30-11:35	PubCaseFinder and PhenoTouch
	Toyofumi Fujiwara Database Center for Life Science (DBCLS), Japan
11:35-11:40	Nan-Byo diagnosis
	Giovanni Charles Mendelian

Talks: Agriculture

11:40-11:50	The Agronomic Linked Data project (AgroLD) a knowledge network platform for plants
	Pierre Larmande Institute of Research for Development (IRD)
11:50-12:00	Towards a Plant Breeding Ontology (PBO) enabling phenotypic and genotypic data interlinkage
	Erick Antezana Norwegian University of Science and Technology (NTNU), Norway and Bayer CropScience, Belgium
12:00-12:05	Hayai-Annotation Plants: R-package for an ultra fast and highly accurate gene annotation in plants
	Andrea Ghelfi Kazusa DNA Research Institute (KDRI), Japan

12:05-13:30 Lunch

Talks: Omics

13:30-13:40	MetaNetX/MNXref: a resource for systems biology and metabolomics
	Marco Pagni SIB Swiss Institute of Bioinformatics, Switzerland
13:40-13:50	Knowledge graphs, applied use of terminologies, and improving the quality of linked content in the chemically-relevant biomedical research space
	Evan Bolton National Center for Biotechnology Information (NCBI), USA
13:50-13:55	Semantically linking glycoscience data in the GlyCosmos Portal
	Kiyoko F. Aoki-Kinoshita Soka University, Japan
13:55-14:00	The Carbohydrate-Active enZyme database
	Nicolas Terrapon Architecture et Fonction des Macromolécules Biologiques (AFMB), Aix-Marseille Université (AMU)
14:00-14:05	HAMAP rules
	Jerven Bolleman SIB Swiss Institute of Bioinformatics, Switzerland
14:05-14:10	jPOST proteome database (tentative)
	Susumu Goto Database Center for Life Science (DBCLS), Japan
14:10-14:15	All of gene expression (AOE)
	Hidemasa Bono Database Center for Life Science (DBCLS), Japan
14:15-14:20	Plasmid genomics
	Haruo Suzuki Keio University, Japan
14:20-14:30	Towards practical graphical pangenomics
	Erik Garrison Wellcome Trust Sanger Institute
14:30-14:35	Detection of small-size structural variants lethal in humans
	Vincenza Colonna National Research Council (CNR), Italy
14:35-14:40	MoMIG: a graph genome browser
	Toshiyuki Yokoyama The University of Tokyo, Japan
14:40-14:45	Personal data on genome graph
	Masanobu Jimbo WASEDA University, Japan

Talks: AMED

14:45-14:55	Enabling genomic & phenotypic data sharing for the benefit of human health
	Soichi Ogishima ToMMo, Tohoku Univ
14:55-15:05	Genome Medicine Alliance Japan (GEM-J): a proposal for GA4GH driver projects
	Takako Takai Japan Agency for Medical Research and Development (AMED)
15:05-15:10	MGeND: Integrated database of genomic and clinical information to promote precision medicine in Japan
	Mayumi Kamada Kyoto University, Japan
15:10-15:15	TogoVar: NBDC's integrated database of Japanese genomic variation
	Nobutaka Mitsuhashi National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST)

15:15-16:30 Coffee break & exhibition

Talks: GA4GH

16:30-16:40	The GA4GH Cloud Work Stream: Emerging Standards for Genomics in the Cloud
	Brian Daniel O'Connor University of California Santa Cruz (UCSC)

Talks: Software

16:40-16:50	Enhanced data and tools use, re-use, and collaboration with the Common Workflow Language standards: from the life sciences to astrophysics and beyond.
	Michael R. Crusoe Common Workflow Language project (CWL)
16:50-17:00	Things that Docker does not provide for genome informatics
	Masahiro Kasahara University of Tokyo (UTokyo)
17:00-17:05	Where to run a workflow that runs wherever you want: runtime metrics analysis for workflow deployment
	Tazro Ohta Database Center for Life Science (DBCLS), Japan
17:05-17:10	Reproducible analysis challenge starts with software
	Pjotr Prins University Medical Center Utrecht, The Netherlands
17:10-17:20	mediKanren: a constraint logic language for biomedical reasoning
	William Edward Byrd Hugh Kaul Precision Medicine Institute, University of Alabama at Birmingham, USA
17:20-17:25	KGX - a tool designed to exchange information for BioLink Model compliant KGs
	Deepak Raveendran Unni Lawrence Berkeley National Laboratory (LBNL)
17:25-17:30	Vec2SPARQL: combining SPARQL queries and vector space embeddings
	Maxat Kulmanov King Abdullah University of Science and Technology
17:30-17:35	Reduce Reuse Recycle in Data
	Yasunori Yamamoto Database Center for Life Science (DBCLS), Japan
17:35-17:40	Application of LOD Surfer to Multiple Protein Sequence Alignment
	Atsuko Yamaguchi Database Center for Life Science (DBCLS), Japan
17:40-17:45	Standardising BioJS components with WebComponents
	Yo Yehudi University of Cambridge
17:45-17:50	webcomponent to rdf integration
	Nobuyuki Aoki SparqLite LLC
17:50-17:55	TraitBLAST - towards a semantic framework for inter-species screening and comparison of phenotypes
	Claus Weiland Senckenberg Biodiversity and Climate Research Center (SBIK-F)
17:55-18:00	BioRuby
	Naohisa Goto Research Institute for Microbial Diseases (RIMD), Osaka University, Japan
18:00-18:10	Evaluating FAIRness
	Mark Wilkinson Center for Plant Biotechnology and Genomics, UPM Madrid

18:15-18:30 Group photo

19:00- Dinner

Live streaming will be available at

• YouTube Live https://www.youtube.com/user/togotv/live